6.4. Table Maintenance and Crash Recovery

This section discusses how to use myisamchk to check or repair MyISAM tables (tables that have .MYD and .MYI files for storing data and indexes). For general myisamchk background, see Section 4.6.3, “myisamchk — MyISAM Table-Maintenance Utility”.

You can use myisamchk to get information about your database tables or to check, repair, or optimize them. The following sections describe how to perform these operations and how to set up a table maintenance schedule.

Even though table repair with myisamchk is quite secure, it is always a good idea to make a backup before doing a repair or any maintenance operation that could make a lot of changes to a table.

myisamchk operations that affect indexes can cause FULLTEXT indexes to be rebuilt with full-text parameters that are incompatible with the values used by the MySQL server. To avoid this problem, follow the guidelines in Section 4.6.3.1, “myisamchk General Options”.

In many cases, you may find it simpler to do MyISAM table maintenance using the SQL statements that perform operations that myisamchk can do:

These statements can be used directly or by means of the mysqlcheck client program. One advantage of these statements over myisamchk is that the server does all the work. With myisamchk, you must make sure that the server does not use the tables at the same time so that there is no unwanted interaction between myisamchk and the server. See Section 12.5.2.1, “ANALYZE TABLE Syntax”, Section 12.5.2.3, “CHECK TABLE Syntax”, Section 12.5.2.5, “OPTIMIZE TABLE Syntax”, and Section 12.5.2.6, “REPAIR TABLE Syntax”.

6.4.1. Using myisamchk for Crash Recovery

This section describes how to check for and deal with data corruption in MySQL databases. If your tables become corrupted frequently, you should try to find the reason why. See Section B.1.4.2, “What to Do If MySQL Keeps Crashing”.

For an explanation of how MyISAM tables can become corrupted, see Section 13.1.4, “MyISAM Table Problems”.

If you run mysqld with external locking disabled (which is the default as of MySQL 4.0), you cannot reliably use myisamchk to check a table when mysqld is using the same table. If you can be certain that no one will access the tables through mysqld while you run myisamchk, you only have to execute mysqladmin flush-tables before you start checking the tables. If you cannot guarantee this, you must stop mysqld while you check the tables. If you run myisamchk to check tables that mysqld is updating at the same time, you may get a warning that a table is corrupt even when it is not.

If the server is run with external locking enabled, you can use myisamchk to check tables at any time. In this case, if the server tries to update a table that myisamchk is using, the server will wait for myisamchk to finish before it continues.

If you use myisamchk to repair or optimize tables, you must always ensure that the mysqld server is not using the table (this also applies if external locking is disabled). If you don't stop mysqld, you should at least do a mysqladmin flush-tables before you run myisamchk. Your tables may become corrupted if the server and myisamchk access the tables simultaneously.

When performing crash recovery, it is important to understand that each MyISAM table tbl_name in a database corresponds to three files in the database directory:

FilePurpose
tbl_name.frmDefinition (format) file
tbl_name.MYDData file
tbl_name.MYIIndex file

Each of these three file types is subject to corruption in various ways, but problems occur most often in data files and index files.

myisamchk works by creating a copy of the .MYD data file row by row. It ends the repair stage by removing the old .MYD file and renaming the new file to the original file name. If you use --quick, myisamchk does not create a temporary .MYD file, but instead assumes that the .MYD file is correct and generates only a new index file without touching the .MYD file. This is safe, because myisamchk automatically detects whether the .MYD file is corrupt and aborts the repair if it is. You can also specify the --quick option twice to myisamchk. In this case, myisamchk does not abort on some errors (such as duplicate-key errors) but instead tries to resolve them by modifying the .MYD file. Normally the use of two --quick options is useful only if you have too little free disk space to perform a normal repair. In this case, you should at least make a backup of the table before running myisamchk.

6.4.2. How to Check MyISAM Tables for Errors

To check a MyISAM table, use the following commands:

  • myisamchk tbl_name

    This finds 99.99% of all errors. What it cannot find is corruption that involves only the data file (which is very unusual). If you want to check a table, you should normally run myisamchk without options or with the -s (silent) option.

  • myisamchk -m tbl_name

    This finds 99.999% of all errors. It first checks all index entries for errors and then reads through all rows. It calculates a checksum for all key values in the rows and verifies that the checksum matches the checksum for the keys in the index tree.

  • myisamchk -e tbl_name

    This does a complete and thorough check of all data (-e means “extended check”). It does a check-read of every key for each row to verify that they indeed point to the correct row. This may take a long time for a large table that has many indexes. Normally, myisamchk stops after the first error it finds. If you want to obtain more information, you can add the -v (verbose) option. This causes myisamchk to keep going, up through a maximum of 20 errors.

  • myisamchk -e -i tbl_name

    This is like the previous command, but the -i option tells myisamchk to print additional statistical information.

In most cases, a simple myisamchk command with no arguments other than the table name is sufficient to check a table.

6.4.3. How to Repair Tables

The discussion in this section describes how to use myisamchk on MyISAM tables (extensions .MYI and .MYD).

You can also (and should, if possible) use the CHECK TABLE and REPAIR TABLE statements to check and repair MyISAM tables. See Section 12.5.2.3, “CHECK TABLE Syntax”, and Section 12.5.2.6, “REPAIR TABLE Syntax”.

Symptoms of corrupted tables include queries that abort unexpectedly and observable errors such as these:

  • tbl_name.frm is locked against change

  • Can't find file tbl_name.MYI (Errcode: nnn)

  • Unexpected end of file

  • Record file is crashed

  • Got error nnn from table handler

To get more information about the error, run perror nnn, where nnn is the error number. The following example shows how to use perror to find the meanings for the most common error numbers that indicate a problem with a table: 

shell> perror 126 127 132 134 135 136 141 144 145
MySQL error code 126 = Index file is crashed
MySQL error code 127 = Record-file is crashed
MySQL error code 132 = Old database file
MySQL error code 134 = Record was already deleted (or record file crashed)
MySQL error code 135 = No more room in record file
MySQL error code 136 = No more room in index file
MySQL error code 141 = Duplicate unique key or constraint on write or update
MySQL error code 144 = Table is crashed and last repair failed
MySQL error code 145 = Table was marked as crashed and should be repaired

Note that error 135 (no more room in record file) and error 136 (no more room in index file) are not errors that can be fixed by a simple repair. In this case, you must use ALTER TABLE to increase the MAX_ROWS and AVG_ROW_LENGTH table option values: 

ALTER TABLE tbl_name MAX_ROWS=xxx AVG_ROW_LENGTH=yyy;

If you do not know the current table option values, use SHOW CREATE TABLE.

For the other errors, you must repair your tables. myisamchk can usually detect and fix most problems that occur.

The repair process involves up to four stages, described here. Before you begin, you should change location to the database directory and check the permissions of the table files. On Unix, make sure that they are readable by the user that mysqld runs as (and to you, because you need to access the files you are checking). If it turns out you need to modify files, they must also be writable by you.

This section is for the cases where a table check fails (such as those described in Section 6.4.2, “How to Check MyISAM Tables for Errors”), or you want to use the extended features that myisamchk provides.

The options that you can use for table maintenance with myisamchk are described in Section 4.6.3, “myisamchk — MyISAM Table-Maintenance Utility”.

If you are going to repair a table from the command line, you must first stop the mysqld server. Note that when you do mysqladmin shutdown on a remote server, the mysqld server is still alive for a while after mysqladmin returns, until all statement-processing has stopped and all index changes have been flushed to disk.

Stage 1: Checking your tables

Run myisamchk *.MYI or myisamchk -e *.MYI if you have more time. Use the -s (silent) option to suppress unnecessary information.

If the mysqld server is stopped, you should use the --update-state option to tell myisamchk to mark the table as “checked.”

You have to repair only those tables for which myisamchk announces an error. For such tables, proceed to Stage 2.

If you get unexpected errors when checking (such as out of memory errors), or if myisamchk crashes, go to Stage 3.

Stage 2: Easy safe repair

First, try myisamchk -r -q tbl_name (-r -q means “quick recovery mode”). This attempts to repair the index file without touching the data file. If the data file contains everything that it should and the delete links point at the correct locations within the data file, this should work, and the table is fixed. Start repairing the next table. Otherwise, use the following procedure:

  1. Make a backup of the data file before continuing.

  2. Use myisamchk -r tbl_name (-r means “recovery mode”). This removes incorrect rows and deleted rows from the data file and reconstructs the index file.

  3. If the preceding step fails, use myisamchk --safe-recover tbl_name. Safe recovery mode uses an old recovery method that handles a few cases that regular recovery mode does not (but is slower).

Note: If you want a repair operation to go much faster, you should set the values of the sort_buffer_size and key_buffer_size variables each to about 25% of your available memory when running myisamchk.

If you get unexpected errors when repairing (such as out of memory errors), or if myisamchk crashes, go to Stage 3.

Stage 3: Difficult repair

You should reach this stage only if the first 16KB block in the index file is destroyed or contains incorrect information, or if the index file is missing. In this case, it is necessary to create a new index file. Do so as follows:

  1. Move the data file to a safe place.

  2. Use the table description file to create new (empty) data and index files: 

    shell> mysql db_name
mysql> SET AUTOCOMMIT=1;
mysql> TRUNCATE TABLE tbl_name;
mysql> quit

  3. Copy the old data file back onto the newly created data file. (Do not just move the old file back onto the new file. You want to retain a copy in case something goes wrong.)

Go back to Stage 2. myisamchk -r -q should work. (This should not be an endless loop.)

You can also use the REPAIR TABLE tbl_name USE_FRM SQL statement, which performs the whole procedure automatically. There is also no possibility of unwanted interaction between a utility and the server, because the server does all the work when you use REPAIR TABLE. See Section 12.5.2.6, “REPAIR TABLE Syntax”.

Stage 4: Very difficult repair

You should reach this stage only if the .frm description file has also crashed. That should never happen, because the description file is not changed after the table is created:

  1. Restore the description file from a backup and go back to Stage 3. You can also restore the index file and go back to Stage 2. In the latter case, you should start with myisamchk -r.

  2. If you do not have a backup but know exactly how the table was created, create a copy of the table in another database. Remove the new data file, and then move the .frm description and .MYI index files from the other database to your crashed database. This gives you new description and index files, but leaves the .MYD data file alone. Go back to Stage 2 and attempt to reconstruct the index file.

6.4.4. Table Optimization

To coalesce fragmented rows and eliminate wasted space that results from deleting or updating rows, run myisamchk in recovery mode: 

shell> myisamchk -r tbl_name

You can optimize a table in the same way by using the OPTIMIZE TABLE SQL statement. OPTIMIZE TABLE does a table repair and a key analysis, and also sorts the index tree so that key lookups are faster. There is also no possibility of unwanted interaction between a utility and the server, because the server does all the work when you use OPTIMIZE TABLE. See Section 12.5.2.5, “OPTIMIZE TABLE Syntax”.

myisamchk has a number of other options that you can use to improve the performance of a table:

  • --analyze, -a

  • --sort-index, -S

  • --sort-records=index_num, -R index_num

For a full description of all available options, see Section 4.6.3, “myisamchk — MyISAM Table-Maintenance Utility”.

6.4.5. Getting Information About a Table

To obtain a description of a table or statistics about it, use the commands shown here. We explain some of the information in more detail later.

  • myisamchk -d tbl_name

    Runs myisamchk in “describe mode” to produce a description of your table. If you start the MySQL server with external locking disabled, myisamchk may report an error for a table that is updated while it runs. However, because myisamchk does not change the table in describe mode, there is no risk of destroying data.

  • myisamchk -d -v tbl_name

    Adding -v runs myisamchk in verbose mode so that it produces more information about what it is doing.

  • myisamchk -eis tbl_name

    Shows only the most important information from a table. This operation is slow because it must read the entire table.

  • myisamchk -eiv tbl_name

    This is like -eis, but tells you what is being done.

The tbl_name argument can be either the name of a MyISAM table or the name of its index file, as described in Section 4.6.3, “myisamchk — MyISAM Table-Maintenance Utility”. Multiple tbl_name arguments can be given.

Sample output for some of these commands follows. They are based on a table with these data and index file sizes: 

-rw-rw-r--   1 monty    tcx     317235748 Jan 12 17:30 company.MYD
-rw-rw-r--   1 davida   tcx      96482304 Jan 12 18:35 company.MYI

Example of myisamchk -d output: 

MyISAM file:     company.MYI
Record format:   Fixed length
Data records:    1403698  Deleted blocks:         0
Recordlength:    226

table description:
Key Start Len Index   Type
1   2     8   unique  double
2   15    10  multip. text packed stripped
3   219   8   multip. double
4   63    10  multip. text packed stripped
5   167   2   multip. unsigned short
6   177   4   multip. unsigned long
7   155   4   multip. text
8   138   4   multip. unsigned long
9   177   4   multip. unsigned long
    193   1           text

Example of myisamchk -d -v output: 

MyISAM file:         company
Record format:       Fixed length
File-version:        1
Creation time:       1999-10-30 12:12:51
Recover time:        1999-10-31 19:13:01
Status:              checked
Data records:            1403698  Deleted blocks:              0
Datafile parts:          1403698  Deleted data:                0
Datafile pointer (bytes):      3  Keyfile pointer (bytes):     3
Max datafile length:  3791650815  Max keyfile length: 4294967294
Recordlength:                226

table description:
Key Start Len Index   Type                  Rec/key     Root Blocksize
1   2     8   unique  double                      1 15845376      1024
2   15    10  multip. text packed stripped        2 25062400      1024
3   219   8   multip. double                     73 40907776      1024
4   63    10  multip. text packed stripped        5 48097280      1024
5   167   2   multip. unsigned short           4840 55200768      1024
6   177   4   multip. unsigned long            1346 65145856      1024
7   155   4   multip. text                     4995 75090944      1024
8   138   4   multip. unsigned long              87 85036032      1024
9   177   4   multip. unsigned long             178 96481280      1024
    193   1           text

Example of myisamchk -eis output: 

Checking MyISAM file: company
Key:  1:  Keyblocks used:  97%  Packed:    0%  Max levels:  4
Key:  2:  Keyblocks used:  98%  Packed:   50%  Max levels:  4
Key:  3:  Keyblocks used:  97%  Packed:    0%  Max levels:  4
Key:  4:  Keyblocks used:  99%  Packed:   60%  Max levels:  3
Key:  5:  Keyblocks used:  99%  Packed:    0%  Max levels:  3
Key:  6:  Keyblocks used:  99%  Packed:    0%  Max levels:  3
Key:  7:  Keyblocks used:  99%  Packed:    0%  Max levels:  3
Key:  8:  Keyblocks used:  99%  Packed:    0%  Max levels:  3
Key:  9:  Keyblocks used:  98%  Packed:    0%  Max levels:  4
Total:    Keyblocks used:  98%  Packed:   17%

Records:          1403698    M.recordlength:     226
Packed:             0%
Recordspace used:     100%   Empty space:          0%
Blocks/Record:   1.00
Record blocks:    1403698    Delete blocks:        0
Recorddata:     317235748    Deleted data:         0
Lost space:             0    Linkdata:             0

User time 1626.51, System time 232.36
Maximum resident set size 0, Integral resident set size 0
Non physical pagefaults 0, Physical pagefaults 627, Swaps 0
Blocks in 0 out 0, Messages in 0 out 0, Signals 0
Voluntary context switches 639, Involuntary context switches 28966

Example of myisamchk -eiv output: 

Checking MyISAM file: company
Data records: 1403698   Deleted blocks:       0
- check file-size
- check delete-chain
block_size 1024:
index  1:
index  2:
index  3:
index  4:
index  5:
index  6:
index  7:
index  8:
index  9:
No recordlinks
- check index reference
- check data record references index: 1
Key:  1:  Keyblocks used:  97%  Packed:    0%  Max levels:  4
- check data record references index: 2
Key:  2:  Keyblocks used:  98%  Packed:   50%  Max levels:  4
- check data record references index: 3
Key:  3:  Keyblocks used:  97%  Packed:    0%  Max levels:  4
- check data record references index: 4
Key:  4:  Keyblocks used:  99%  Packed:   60%  Max levels:  3
- check data record references index: 5
Key:  5:  Keyblocks used:  99%  Packed:    0%  Max levels:  3
- check data record references index: 6
Key:  6:  Keyblocks used:  99%  Packed:    0%  Max levels:  3
- check data record references index: 7
Key:  7:  Keyblocks used:  99%  Packed:    0%  Max levels:  3
- check data record references index: 8
Key:  8:  Keyblocks used:  99%  Packed:    0%  Max levels:  3
- check data record references index: 9
Key:  9:  Keyblocks used:  98%  Packed:    0%  Max levels:  4
Total:    Keyblocks used:   9%  Packed:   17%

- check records and index references
*** LOTS OF ROW NUMBERS DELETED ***

Records:         1403698   M.recordlength:   226   Packed:           0%
Recordspace used:    100%  Empty space:        0%  Blocks/Record: 1.00
Record blocks:   1403698   Delete blocks:      0
Recorddata:    317235748   Deleted data:       0
Lost space:            0   Linkdata:           0

User time 1639.63, System time 251.61
Maximum resident set size 0, Integral resident set size 0
Non physical pagefaults 0, Physical pagefaults 10580, Swaps 0
Blocks in 4 out 0, Messages in 0 out 0, Signals 0
Voluntary context switches 10604, Involuntary context switches 122798

Explanations for the types of information myisamchk produces are given here. “Keyfile” refers to the index file. “Record” and “row” are synonymous.

  • MyISAM file

    Name of the MyISAM (index) file.

  • File-version

    Version of MyISAM format. Currently always 2.

  • Creation time

    When the data file was created.

  • Recover time

    When the index/data file was last reconstructed.

  • Data records

    How many rows are in the table.

  • Deleted blocks

    How many deleted blocks still have reserved space. You can optimize your table to minimize this space. See Section 6.4.4, “Table Optimization”.

  • Datafile parts

    For dynamic-row format, this indicates how many data blocks there are. For an optimized table without fragmented rows, this is the same as Data records.

  • Deleted data

    How many bytes of unreclaimed deleted data there are. You can optimize your table to minimize this space. See Section 6.4.4, “Table Optimization”.

  • Datafile pointer

    The size of the data file pointer, in bytes. It is usually 2, 3, 4, or 5 bytes. Most tables manage with 2 bytes, but this cannot be controlled from MySQL yet. For fixed tables, this is a row address. For dynamic tables, this is a byte address.

  • Keyfile pointer

    The size of the index file pointer, in bytes. It is usually 1, 2, or 3 bytes. Most tables manage with 2 bytes, but this is calculated automatically by MySQL. It is always a block address.

  • Max datafile length

    How long the table data file can become, in bytes.

  • Max keyfile length

    How long the table index file can become, in bytes.

  • Recordlength

    How much space each row takes, in bytes.

  • Record format

    The format used to store table rows. The preceding examples use Fixed length. Other possible values are Compressed and Packed.

  • table description

    A list of all keys in the table. For each key, myisamchk displays some low-level information:

    • Key

      This key's number.

    • Start

      Where in the row this portion of the index starts.

    • Len

      How long this portion of the index is. For packed numbers, this should always be the full length of the column. For strings, it may be shorter than the full length of the indexed column, because you can index a prefix of a string column.

    • Index

      Whether a key value can exist multiple times in the index. Possible values are unique or multip. (multiple).

    • Type

      What data type this portion of the index has. This is a MyISAM data type with the possible values packed, stripped, or empty.

    • Root

      Address of the root index block.

    • Blocksize

      The size of each index block. By default this is 1024, but the value may be changed at compile time when MySQL is built from source.

    • Rec/key

      This is a statistical value used by the optimizer. It tells how many rows there are per value for this index. A unique index always has a value of 1. This may be updated after a table is loaded (or greatly changed) with myisamchk -a. If this is not updated at all, a default value of 30 is given.

    For the table shown in the examples, there are two table description lines for the ninth index. This indicates that it is a multiple-part index with two parts.

  • Keyblocks used

    What percentage of the keyblocks are used. When a table has just been reorganized with myisamchk, as for the table in the examples, the values are very high (very near the theoretical maximum).

  • Packed

    MySQL tries to pack key values that have a common suffix. This can only be used for indexes on CHAR and VARCHAR columns. For long indexed strings that have similar leftmost parts, this can significantly reduce the space used. In the third of the preceding examples, the fourth key is 10 characters long and a 60% reduction in space is achieved.

  • Max levels

    How deep the B-tree for this key is. Large tables with long key values get high values.

  • Records

    How many rows are in the table.

  • M.recordlength

    The average row length. This is the exact row length for tables with fixed-length rows, because all rows have the same length.

  • Packed

    MySQL strips spaces from the end of strings. The Packed value indicates the percentage of savings achieved by doing this.

  • Recordspace used

    What percentage of the data file is used.

  • Empty space

    What percentage of the data file is unused.

  • Blocks/Record

    Average number of blocks per row (that is, how many links a fragmented row is composed of). This is always 1.0 for fixed-format tables. This value should stay as close to 1.0 as possible. If it gets too large, you can reorganize the table. See Section 6.4.4, “Table Optimization”.

  • Recordblocks

    How many blocks (links) are used. For fixed-format tables, this is the same as the number of rows.

  • Deleteblocks

    How many blocks (links) are deleted.

  • Recorddata

    How many bytes in the data file are used.

  • Deleted data

    How many bytes in the data file are deleted (unused).

  • Lost space

    If a row is updated to a shorter length, some space is lost. This is the sum of all such losses, in bytes.

  • Linkdata

    When the dynamic table format is used, row fragments are linked with pointers (4 to 7 bytes each). Linkdata is the sum of the amount of storage used by all such pointers.

If a table has been compressed with myisampack, myisamchk -d prints additional information about each table column. See Section 4.6.5, “myisampack — Generate Compressed, Read-Only MyISAM Tables”, for an example of this information and a description of what it means.

6.4.6. Setting Up a Table Maintenance Schedule

It is a good idea to perform table checks on a regular basis rather than waiting for problems to occur. One way to check and repair MyISAM tables is with the CHECK TABLE and REPAIR TABLE statements. See Section 12.5.2.3, “CHECK TABLE Syntax”, and Section 12.5.2.6, “REPAIR TABLE Syntax”.

Another way to check tables is to use myisamchk. For maintenance purposes, you can use myisamchk -s. The -s option (short for --silent) causes myisamchk to run in silent mode, printing messages only when errors occur.

It is also a good idea to enable automatic MyISAM table checking. For example, whenever the machine has done a restart in the middle of an update, you usually need to check each table that could have been affected before it is used further. (These are “expected crashed tables.”) To check MyISAM tables automatically, start the server with the --myisam-recover option. See Section 5.1.2, “Command Options”.

You should also check your tables regularly during normal system operation. At MySQL AB, we run a cron job to check all our important tables once a week, using a line like this in a crontab file: 

35 0 * * 0 /path/to/myisamchk --fast --silent /path/to/datadir/*/*.MYI

This prints out information about crashed tables so that we can examine and repair them when needed.

Because we have not had any unexpectedly crashed tables (tables that become corrupted for reasons other than hardware trouble) for several years, once a week is more than sufficient for us.

We recommend that to start with, you execute myisamchk -s each night on all tables that have been updated during the last 24 hours, until you come to trust MySQL as much as we do.

Normally, MySQL tables need little maintenance. If you are performing many updates to MyISAM tables with dynamic-sized rows (tables with VARCHAR, BLOB, or TEXT columns) or have tables with many deleted rows you may want to defragment/reclaim space from the tables from time to time. You can do this by using OPTIMIZE TABLE on the tables in question. Alternatively, if you can stop the mysqld server for a while, change location into the data directory and use this command while the server is stopped: 

shell> myisamchk -r -s --sort-index --sort_buffer_size=16M */*.MYI